
# CLI reference

The Clisbot CLI lets you manage agents from your terminal. It's the same interface exposed by the daemon's API, so anything you can do in the app you can do from the command line.

> **Agent orchestration:** You can tell coding agents to use the Clisbot CLI to spawn and manage other agents. Clisbot recognizes the calling agent, so CLI-created workers get the same workspace and parent defaults as MCP-created workers.

## Quick reference

```bash
clisbot run "fix the tests"            # Start an agent
clisbot ls                             # List running agents
clisbot attach <id>                    # Stream agent output
clisbot send <id> "also fix linting"   # Send follow-up task
clisbot logs <id>                      # View agent timeline
clisbot stop <id>                      # Stop an agent
```

## Provider diagnostics

Ask the daemon to inspect the provider environment it actually uses:

```bash
clisbot provider diagnostic claude
clisbot provider diagnostic codex --json
clisbot --host devbox:6868 provider diagnostic opencode
```

The diagnostic includes the configured command, daemon `PATH` and shell, matching binaries, resolved path, version, model count, and provider status. Use the global `--host` option for a remote daemon. This is the same diagnostic shown under **Settings → your host → Providers → provider → Diagnostic**.

## Running agents

Use `clisbot run` to start a new agent with a task:

```bash
clisbot run "implement user authentication"
clisbot run --provider codex "refactor the API layer"
clisbot run --background "run the focused test suite"
clisbot run --new-workspace worktree --worktree-mode branch-off --new-branch feature/x --base origin/main "implement feature X"
clisbot run --workspace <workspace-id> "review the current diff"
clisbot run --output-schema schema.json "extract release notes"
clisbot run --output-schema '{"type":"object","properties":{"summary":{"type":"string"}},"required":["summary"]}' "summarize release notes"
```

From a human shell, a bare `clisbot run` creates a new local workspace for the current directory. Use `--workspace <id>` to add the agent to an existing workspace, or `--new-workspace local|worktree` to explicitly create a separate workspace for the run.

Worktree creation accepts `--worktree-mode branch-off|checkout-branch|checkout-pr` plus the matching `--new-branch`/`--base`, `--branch`, or `--pr-number`/`--forge` options. Use `--worktree-slug` to choose the managed directory slug.

When an existing Clisbot agent runs the same command, Clisbot recognizes it through `CLISBOT_AGENT_ID`. Without explicit placement, the new agent becomes its subagent in the same workspace. `--workspace` can place that subagent elsewhere without changing its parent.

Use `--output-schema` to return only matching JSON output. You can pass a schema file path or an inline JSON schema object. This mode cannot be used with `--background`.

By default, `clisbot run` waits for completion. Use `--background` to return immediately while the agent keeps running.

## Projects

Register the current directory as a project, then list the projects known to the daemon:

```bash
cd ~/dev/my-app
clisbot project create
clisbot project ls
```

Use the project ID from `clisbot project ls` to rename, reset, or delete a project:

```bash
clisbot project rename <project-id> "My app"
clisbot project rename <project-id> --reset
clisbot project delete <project-id>
```

`--reset` restores the name derived from the project directory. Deleting a project archives its active workspaces and removes the project from Clisbot. It does not delete the project directory.

For a local daemon, `clisbot project create [path]` defaults to the current directory and resolves relative paths on the CLI machine. When you use the global `--host` option or `CLISBOT_HOST`, provide a path that the target daemon can access:

```bash
clisbot --host devbox:6868 project create /srv/repos/api
```

The remote daemon interprets that path on its own machine. See [Workspaces](/docs/workspaces) for how projects group working directories and sessions.

## Workspaces

Create a workspace independently when you want to prepare its files before starting an agent:

```bash
clisbot workspace create --isolation local --path ~/dev/my-app --title main

clisbot workspace create \
  --isolation worktree \
  --path ~/dev/my-app \
  --mode branch-off \
  --new-branch feature/auth \
  --worktree-slug feature-auth \
  --base origin/main

clisbot workspace create \
  --isolation worktree \
  --path ~/dev/my-app \
  --mode checkout-branch \
  --branch feature/existing \
  --worktree-slug existing-copy

clisbot workspace create \
  --isolation worktree \
  --path ~/dev/my-app \
  --mode checkout-pr \
  --pr-number 2186
```

Then list, use, rename, or archive it:

```bash
clisbot workspace ls
clisbot run --workspace <workspace-id> "implement authentication"
clisbot workspace rename <workspace-id> "Auth rework"
clisbot workspace rename <workspace-id> --reset   # back to the branch or directory name
clisbot workspace archive <workspace-id>
```

Add `--forge <name>` to PR checkout when Clisbot cannot infer the forge from the source checkout. See [Git worktrees](/docs/worktrees) for setup hooks and services.

## Terminals

Use the workspace ID when multiple workspaces share a directory:

```bash
clisbot terminal create --workspace <workspace-id> --name Development
clisbot terminal ls --workspace <workspace-id> --json
clisbot terminal send-keys <terminal-id> -l "echo ready"
clisbot terminal send-keys <terminal-id> Enter
clisbot terminal capture <terminal-id>
clisbot terminal kill <terminal-id>
```

Creation defaults to the workspace directory. Add `--cwd <absolute-path>` to change the process directory while keeping that workspace as the owner. Unknown and archived workspace IDs fail.

Without `--workspace`, creation opens the project at `--cwd` or the current directory and reuses its oldest active workspace. Listing without `--workspace` filters by `--cwd` or the current directory and can include multiple workspaces. `ls --all` lists every terminal on the host and cannot be combined with directory or workspace filters.

Create and list results include `id`, `name`, `cwd`, and `workspaceId`. Use `--json` for structured output and the global `--host` option to target another daemon. These commands require a host that supports the [workspace terminal API](/docs/sdk/reference#clientterminals); older hosts return an update message.

## Workspace scripts

List, start, and stop the scripts configured in a workspace's `clisbot.json`:

```bash
clisbot script ls
clisbot script start web
clisbot script stop web
```

By default, Clisbot selects the workspace whose directory is the current directory. Pass `--cwd <path>` to select a different directory, or `--workspace <workspace-id>` when a directory has multiple workspaces. Use the global `--host` option to target another daemon. These commands also accept standard output options such as `--json`.

The output includes each script's lifecycle and supervised terminal ID. Services also include their assigned port, proxy URL, and health. See [Git worktrees](/docs/worktrees#scripts-and-services) for `clisbot.json` configuration.

## Plugins

> **Trust every plugin you add.** `clisbot plugin add` and `clisbot plugin install` mean “I trust this codebase.” Plugin server code and Git preparation commands run unsandboxed with the daemon user's access on the daemon host; client contributions run inside Clisbot. Dependencies and future updates are part of that decision. With the global `--host` option, commands run on the remote daemon host.

Create and manage trusted plugins on a daemon:

```bash
clisbot plugin init /absolute/path/to/plugin
clisbot plugin install /absolute/path/to/plugin
clisbot plugin add owner/repository
clisbot plugin add https://gitlab.com/group/repository.git --ref main
clisbot plugin add owner/monorepo:plugins/review
clisbot plugin ls [id]
clisbot plugin update my-plugin
clisbot plugin update --all
clisbot plugin reload my-plugin
clisbot plugin logs my-plugin
clisbot plugin disable my-plugin
clisbot plugin enable my-plugin
clisbot plugin remove my-plugin
```

GitHub shorthand checks an existing host directory first. Append `:<directory>` for a plugin in a
monorepo. `clisbot plugin ls [id]` does not contact the remote. `clisbot plugin logs <id>` returns the
plugin's recent daemon-side stdout and stderr. Add `--json` for structured entries, or run
`clisbot --host <target> plugin logs <id>` for another daemon. See the
[Plugin reference](/docs/plugins/reference) for installation, trust, lifecycle, and log-retention
behavior.

## Listing agents

```bash
clisbot ls                    # Non-archived agents in active workspaces
clisbot ls -a                 # Also include archived agents
clisbot ls -g                 # Non-archived agents across all workspaces
clisbot ls -a -g --json       # All agents, including archived, as JSON
```

## Streaming output

Use `clisbot attach` to stream an agent's output in real-time:

```bash
clisbot attach abc123   # Attach to agent (Ctrl+C to detach)
```

Agent IDs can be shortened, `abc` works if it's unambiguous.

## Sending messages

Send follow-up tasks to a running or idle agent:

Use the recipient's agent ID from `clisbot ls`, or [copy it from the agent's tab](/docs/orchestration-workflows#send-a-prompt-to-another-agent).

```bash
clisbot send <id> "now run the tests"
clisbot send <id> --image screenshot.png "what's wrong here?"
clisbot send <id> --no-wait "queue this task"
```

## Viewing logs

```bash
clisbot logs <id>                  # Full timeline
clisbot logs <id> -f               # Follow (streaming)
clisbot logs <id> --tail 10        # Last 10 entries
clisbot logs <id> --filter tools   # Only tool calls
```

## Waiting for agents

Block until an agent finishes its current task:

```bash
clisbot wait <id>
clisbot wait <id> --timeout 60   # 60 second timeout
```

Useful in scripts or when one agent needs to wait for another.

## Schedules

Run an agent on a cron schedule. The CLI also accepts simple cadence presets and compiles them to cron. See [Schedules from the CLI](/docs/schedules-cli) for the full reference.

```bash
clisbot schedule create --every 30m --cwd ~/dev/my-app "Continue the refactor and leave a note."
clisbot schedule ls
clisbot schedule pause <id>
```

## Permissions

Agents may request permission for certain actions. Manage these from the CLI:

```bash
clisbot permit ls                # List pending requests
clisbot permit allow <id>        # Allow all pending for agent
clisbot permit deny <id> --all   # Deny all pending
```

## Agent modes

Change an agent's operational mode (provider-specific):

```bash
clisbot agent mode <id> --list   # Show available modes
clisbot agent mode <id> bypass   # Set bypass mode
clisbot agent mode <id> plan     # Set plan mode
clisbot agent detach <id>        # Make a subagent top-level
```

Detaching is an explicit lifecycle action, not a creation flag. The agent keeps running; only its relationship to its parent changes.

## Daemon management

Define an instance once, then start its saved configuration:

```bash
clisbot daemon config set daemon.listen 127.0.0.1:6799 --home ~/clisbot-test
clisbot daemon config set daemon.relay.enabled false --home ~/clisbot-test
clisbot daemon start --home ~/clisbot-test
clisbot project ls --home ~/clisbot-test
clisbot daemon restart --home ~/clisbot-test
clisbot daemon stop --home ~/clisbot-test
```

`start` runs in the background and reports the actual listening address and supervisor PID. It accepts only home selection and `--timeout <seconds>` (default 600). If waiting times out, the supervisor remains running: use the printed status, log, and stop instructions. A worker that exits before becoming ready makes startup fail.

`restart` requests a replacement worker from the existing supervisor. It rereads the file and retains the supervisor's original environment and arguments. Success confirms a different ready worker, following a changed address for a home target. It never starts a stopped daemon or refreshes the supervisor binary. A timeout reports whether the request was acknowledged; it does not prove why reconnection failed.

`stop --home` waits for that local supervisor to exit. On POSIX it signals the supervisor without contacting a TCP endpoint. On Windows it uses the ready daemon's shutdown RPC; an unbound instance requires explicit `--force`. `--force` permits forced process-tree cleanup after the graceful timeout (default 15 seconds). `stop --host` only reports **shutdown requested**; remote process exit is not verified. A service manager may start another instance after the captured supervisor exits.

`status` separates local supervisor state, its published endpoint, the configured address, and RPC reachability. A stopped home is never probed at its configured address. An unbound live supervisor is **not ready**. If an authenticated local connection remains open but status details time out, the result stays `reachable` with a note explaining the unavailable details. Worker and provider fields are omitted. An explicit `--host` query still fails when its status request fails.

`reload` validates the file, applies runtime-safe changes, and reports `appliedPaths`, `restartRequiredPaths`, and `overrideControlledPaths`. It never implicitly restarts. Use `--json` or `--format yaml` for structured results. An older host lacking the capability reports that it needs an update.

The root aliases `start`, `status`, `restart`, `reload`, and `pair` use the same commands as `daemon`. Root `run` and `stop` remain agent operations.

### Foreground deployments and migration

Use environment overrides with the foreground deployment command:

```bash
CLISBOT_LISTEN=127.0.0.1:6799 CLISBOT_RELAY_ENABLED=false clisbot daemon run --home ~/clisbot-test
```

It stays attached until the supervisor exits or you cancel, without a readiness timeout. Worker restart retains these launch inputs. Stop and relaunch the deployment to change them. If the home already has a live supervisor, `run` returns `already_running` without owning or launching a foreground process.

Managed `start` ignores inherited daemon-setting overrides, including `PORT`, `CLISBOT_LISTEN`, relay, voice, and web UI settings. It preserves provider credentials and executable/runtime controls. `start --foreground` is removed; use `daemon run`. Former start/restart configuration flags such as `--port`, `--no-relay`, and `--web-ui` fail before side effects, with the corresponding `config set` migration. See [configuration edits](/docs/configuration#apply-changes).

### Select one daemon

Every daemon-connected CLI command accepts global `--home` or `--host`, before or after the command. A home selects a local supervisor's published endpoint; a host selects an explicit endpoint. There is no configured-address or default-port fallback.

| Selectors                                  | Result                                                 |
| ------------------------------------------ | ------------------------------------------------------ |
| `--home`                                   | That local home, overriding both environment selectors |
| `--host`                                   | That endpoint, overriding both environment selectors   |
| Both flags, or conflicting duplicate flags | `TARGET_AMBIGUOUS`                                     |
| Only `CLISBOT_HOME` or only `CLISBOT_HOST` | The corresponding target                               |
| Both environment selectors, without a flag | `TARGET_AMBIGUOUS`                                     |
| Neither                                    | Default local home, `~/.clisbot`                       |

Local-only `start`, `daemon run`, `config`, `onboard`, and `set-password` reject explicit `--host` and ignore `CLISBOT_HOST`. Endpoint operations retain TCP, Unix socket, Windows pipe, SSH, and pairing-offer transports. A host-side CLI controlling a container needs `--host` or `CLISBOT_HOST`.

## Hub

```bash
clisbot hub login [url]          # Advanced: grant durable organization API access
clisbot hub init                 # Create and optionally deploy a starter trigger here
clisbot hub connect [url]        # Add this Host with one browser approval (no login)
clisbot hub projects             # List legacy projects in the authenticated organization
clisbot hub status               # Show the current Hub relationship
clisbot hub disconnect           # End it
clisbot hub deploy               # Validate and install .clisbot/triggers/*.yml
clisbot hub deploy --dry-run     # Validate without installing
clisbot hub deploy -p <project>   # Deploy an existing legacy project bundle
clisbot hub logout               # Remove the active stored CLI login
```

Run deploy from the repository root. By default it reads every direct `.clisbot/triggers/*.yml` file in deterministic path order. It validates all triggers before installing them one at a time. If an installation fails after earlier ones succeeded, the error lists the installed files. `--dry-run` only validates; it does not create or activate revisions.

Pass `-p, --project <slug>` for an existing legacy bundle: `.clisbot/hub.yml`, direct `.clisbot/workflows/*.yml` files, and referenced workflow partials. See [Deploy from the CLI](/docs/hub/configuration#deploy-from-the-cli).

`connect <url>` is the Host onboarding command. Approve the Host, organization and requested permissions in the browser; the command enrolls it and waits for the connection, including in non-TTY/JSON mode. It creates no CLI credential. Use a scoped API key explicitly for unattended enrollment.

`login` is an advanced administration command. It creates a durable credential with all five Public API scopes and no automatic expiry; it does not enroll a Host. Read [API authentication](/docs/hub/api#authentication) before using it. `logout` only deletes the local copy; server revocation is separate. The legacy guided-login/scaffold flow is available only with `CLISBOT_ONBOARDING_ENABLED=0`.

`init` requires a TTY. It signs in and connects the daemon as needed, then lists the organization's app connections that can back a starter trigger. One usable connection is selected automatically; with several, you choose a **Trigger connection**. If none is ready, setup sends you to **Hub → Apps** and stops before selecting an agent or writing files.

Setup asks which agent provider, model, and mode to run. Providers must be enabled and expose both a selectable model and an execution mode. Suggested model and mode entries are the daemon's defaults; a mode is still selected explicitly when there is no default. Setup then asks for the identity allowed to trigger the bot: a GitHub username, Slack member ID, or Discord user ID. It validates the trigger, writes `.clisbot/triggers/<provider>-help.yml`, and asks whether to deploy. Replacing that file requires confirmation; existing legacy bundles and other trigger files are preserved. See the [generated starter trigger](/docs/hub/configuration#generated-starter-trigger).

Interactive logout checks the same-origin daemon relationship and asks whether to disconnect before deleting the login. Declining removes only the login. JSON and noninteractive logout never prompt or disconnect implicitly; `--disconnect-daemon` is the explicit automation path, and `--force` applies to that daemon disconnection. If a requested disconnection fails, the login is preserved.

Every command resolves and normalizes its destination before Hub or daemon work. Origin precedence is an explicit command origin or `--hub`, then `CLISBOT_HUB_URL`, then the active stored login origin, then the hosted default `https://hub.paseo.sh`. The hosted default never overrides an active login. Credential precedence is `--api-key <secret>`, then `CLISBOT_HUB_API_KEY`, then a stored login for the exact resolved origin. A stored credential is never sent to a different origin. API keys passed through flags or the environment are not stored.

Human output reports the resolved destination before each action. JSON output keeps stdout machine-readable and includes the normalized Hub origin. Bundle diagnostics identify paths without printing configuration contents or credentials.

See [Daemons in Hub](/docs/hub/daemons), [Hub configuration](/docs/hub/configuration), and the [Hub public API](/docs/hub/api).

## Connecting to a remote daemon

The global `--host` option accepts either a local target (`host:port`, a unix socket, or a Windows pipe) or a pairing offer URL, the same `https://app.paseo.sh/#offer=...` link the mobile app uses for QR pairing. With an offer URL the CLI connects through the Clisbot relay with end-to-end encryption, so you can drive a daemon on another machine without exposing it to the network.

Get an offer URL from the daemon you want to control:

```bash
clisbot daemon pair          # prints the QR and link when relay is enabled
clisbot daemon pair --relay  # enables relay without prompting
clisbot daemon pair --json   # structured output; never prompts
```

Relay is off for new installations. A disabled relay returns a `RELAY_DISABLED` error; pass `--relay` to provide explicit consent. For a stopped home, pairing is labelled offline; `--relay` saves relay enablement and the offer includes a start instruction. A live but unreachable home never falls back to an offline identity. Relay pairing is end-to-end encrypted. See [Security](/docs/security).

Use it from anywhere:

```bash
clisbot --host 'https://app.paseo.sh/#offer=eyJ2IjoyLC...' ls
clisbot --host "$OFFER_URL" run "fix the failing tests"
```

You can also set it once via `CLISBOT_HOST` instead of passing `--host` on every command. An explicit flag overrides the environment variable.

## Multi-agent workflows

The CLI is designed to be used by agents themselves. You can instruct an agent to spawn sub-agents for parallel work:

```bash
# Agent A spawns Agent B and waits for it
agent_id=$(clisbot run --background --quiet --title api-agent "implement the API")
clisbot wait "$agent_id"
clisbot logs "$agent_id" --tail 5
```

Because Agent A's ID is present in the environment, Agent B is created as its subagent in the same workspace unless `--workspace` is specified.

Simple implement + verify loop:

```bash
# Requires jq
while true; do
  clisbot run --provider codex "make the tests pass" >/dev/null

  verdict=$(clisbot run --provider claude --output-schema '{"type":"object","properties":{"criteria_met":{"type":"boolean"}},"required":["criteria_met"],"additionalProperties":false}' "ensure tests all pass")
  if echo "$verdict" | jq -e '.criteria_met == true' >/dev/null; then
    echo "criteria met"
    break
  fi
done
```

This pattern enables hierarchical task decomposition, a lead agent can break down work, delegate to specialists, and synthesize results.

## Output formats

Most commands support multiple output formats for scripting:

```bash
clisbot ls --json                # JSON output
clisbot ls --format yaml         # YAML output
clisbot ls -q                    # IDs only (quiet)
```

## Global options

- `--host <target>`, connect to a different daemon (`host:port`, unix socket, or `https://app.paseo.sh/#offer=...` for relay). See [Connecting to a remote daemon](#connecting-to-a-remote-daemon).
- `--json`, JSON output
- `-q, --quiet`, minimal output
- `--no-color`, disable colors
